Variant report

Variant	rs58757235
Chromosome Location	chr11:35219980-35219981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35203667-35220130	U87	brain:	n/a	n/a
2	POLR2A	chr11:35219223-35220248	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr11:35217563-35220070	U87	brain:	n/a	n/a
4	POLR2A	chr11:35219968-35220266	GM12892	blood:	n/a	n/a
5	POLR2A	chr11:35203674-35221500	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr11:35219648-35220108	U87	brain:	n/a	n/a
7	GATA3	chr11:35219758-35220167	SH-SY5Y	brain:	n/a	n/a
8	POLR2A	chr11:35219637-35220108	U87	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDHX-4	chr11:35219416-35220102	NONHSAT018780

Variant related genes	Relation type
CD44	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11033022	0.83[AMR][1000 genomes]
rs11033026	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35198000-35223600	Strong transcription	Dnd41	blood
2	chr11:35198000-35232800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:35200600-35244800	Weak transcription	Fetal Brain Male	brain
4	chr11:35200800-35230000	Strong transcription	Primary hematopoietic stem cells	blood
5	chr11:35200800-35230400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:35201000-35229600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:35202200-35228800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:35202600-35234000	Strong transcription	HMEC	breast
9	chr11:35202600-35234000	Strong transcription	HSMM	muscle
10	chr11:35202600-35234800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:35203000-35231400	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr11:35203000-35231400	Strong transcription	NH-A	brain
13	chr11:35204200-35227000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:35204200-35227200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:35204600-35235200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:35205200-35230600	Strong transcription	Primary B cells from cord blood	blood
17	chr11:35205800-35231400	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:35209000-35234800	Strong transcription	NHEK	skin
19	chr11:35210000-35232600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr11:35211800-35221600	Weak transcription	Colonic Mucosa	Colon
21	chr11:35211800-35227200	Weak transcription	Thymus	Thymus
22	chr11:35212400-35236400	Weak transcription	HSMMtube	muscle
23	chr11:35212600-35227200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:35212800-35226200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:35213200-35234000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:35214200-35221800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:35214200-35221800	Weak transcription	Esophagus	oesophagus
28	chr11:35214200-35221800	Weak transcription	Psoas Muscle	Psoas
29	chr11:35214200-35221800	Weak transcription	Spleen	Spleen
30	chr11:35214200-35222200	Weak transcription	Left Ventricle	heart
31	chr11:35214200-35222200	Weak transcription	Lung	lung
32	chr11:35214200-35226000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:35214200-35230600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:35214200-35238400	Weak transcription	Gastric	stomach
35	chr11:35214200-35240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:35214400-35223600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:35214400-35230000	Weak transcription	Liver	Liver
38	chr11:35214400-35231400	Strong transcription	Osteobl	bone
39	chr11:35214600-35235200	Weak transcription	HUVEC	blood vessel
40	chr11:35214600-35250600	Weak transcription	Fetal Intestine Large	intestine
41	chr11:35214800-35221200	Weak transcription	Adipose Nuclei	Adipose
42	chr11:35214800-35221800	Weak transcription	Aorta	Aorta
43	chr11:35214800-35221800	Weak transcription	Fetal Lung	lung
44	chr11:35214800-35236000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:35215000-35221800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:35215200-35221800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:35215600-35234600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:35215600-35241200	Weak transcription	Small Intestine	intestine
49	chr11:35216000-35221800	Weak transcription	GM12878-XiMat	blood
50	chr11:35216200-35222000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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