Variant report

Variant	rs58769131
Chromosome Location	chr12:26309190-26309191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26308692..26310316-chr12:26311328..26313517,2	MCF-7	breast:
2	chr12:26308693..26311647-chr12:26329505..26331946,2	K562	blood:

rs_ID	r²[population]
rs12818979	0.89[ASN][1000 genomes]
rs12822290	0.89[ASN][1000 genomes]
rs12827659	0.89[ASN][1000 genomes]
rs12829316	0.89[ASN][1000 genomes]
rs1480037	0.87[ASN][1000 genomes]
rs1531649	0.89[ASN][1000 genomes]
rs17380788	0.89[ASN][1000 genomes]
rs34371272	0.89[ASN][1000 genomes]
rs34753809	0.89[ASN][1000 genomes]
rs4963970	0.89[ASN][1000 genomes]
rs57749967	1.00[ASN][1000 genomes]
rs57948457	1.00[ASN][1000 genomes]
rs58269831	0.87[ASN][1000 genomes]
rs58292015	0.89[ASN][1000 genomes]
rs59631457	0.89[ASN][1000 genomes]
rs61139398	1.00[ASN][1000 genomes]
rs73292989	0.89[ASN][1000 genomes]
rs73292998	0.89[ASN][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:26306000-26311400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26306000-26311400	Weak transcription	Gastric	stomach
5	chr12:26306600-26311800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:26306800-26309200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:26306800-26309600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr12:26306800-26311600	Weak transcription	Spleen	Spleen
9	chr12:26307000-26309200	Weak transcription	Brain Anterior Caudate	brain
10	chr12:26307000-26309400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:26307000-26309600	Weak transcription	Fetal Intestine Small	intestine
12	chr12:26307000-26309800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr12:26307000-26311600	Weak transcription	Esophagus	oesophagus
14	chr12:26307200-26309400	Enhancers	Primary B cells from cord blood	blood
15	chr12:26307200-26309400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr12:26307200-26309600	Weak transcription	Stomach Mucosa	stomach
17	chr12:26307200-26309800	Weak transcription	A549	lung
18	chr12:26307600-26309200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:26307800-26311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:26308000-26309200	Weak transcription	Pancreas	Pancrea
21	chr12:26308000-26316800	Weak transcription	HMEC	breast
22	chr12:26308400-26309200	Flanking Active TSS	GM12878-XiMat	blood
23	chr12:26308400-26311400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:26308600-26309400	Enhancers	Fetal Thymus	thymus
25	chr12:26308800-26309200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr12:26308800-26310200	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr12:26309000-26311200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links