Variant report

Variant	rs73292998
Chromosome Location	chr12:26353829-26353830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12318480	0.89[EUR][1000 genomes]
rs12818979	1.00[ASN][1000 genomes]
rs12822290	1.00[ASN][1000 genomes]
rs12827659	1.00[ASN][1000 genomes]
rs12829316	1.00[ASN][1000 genomes]
rs1531649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380788	1.00[ASN][1000 genomes]
rs34371272	1.00[ASN][1000 genomes]
rs34753809	1.00[ASN][1000 genomes]
rs4963970	1.00[ASN][1000 genomes]
rs57749967	0.89[ASN][1000 genomes]
rs57948457	0.89[ASN][1000 genomes]
rs58292015	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58769131	0.89[ASN][1000 genomes]
rs59631457	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61139398	0.89[ASN][1000 genomes]
rs71438624	0.82[ASN][1000 genomes]
rs73292989	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26349600-26358000	Weak transcription	Fetal Intestine Small	intestine
2	chr12:26349800-26356600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:26349800-26357400	Weak transcription	Ovary	ovary
4	chr12:26349800-26358000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:26350600-26357600	Weak transcription	NHLF	lung
6	chr12:26351000-26355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:26351000-26357800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:26351200-26355800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:26351200-26357400	Weak transcription	Right Ventricle	heart
10	chr12:26351400-26358000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr12:26351600-26356600	Weak transcription	Aorta	Aorta
12	chr12:26352000-26356600	Weak transcription	Fetal Muscle Leg	muscle
13	chr12:26352000-26357400	Weak transcription	Left Ventricle	heart
14	chr12:26352000-26357800	Weak transcription	Small Intestine	intestine
15	chr12:26352000-26358000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr12:26352200-26356600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:26352200-26357800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:26352200-26365200	Weak transcription	HSMMtube	muscle
19	chr12:26352400-26355000	Weak transcription	HSMM	muscle
20	chr12:26352400-26356600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr12:26352400-26357000	Weak transcription	Brain Hippocampus Middle	brain
22	chr12:26352600-26355200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:26352600-26355400	Weak transcription	Fetal Heart	heart
24	chr12:26352600-26357000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:26352600-26357600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:26352600-26358000	Weak transcription	Osteobl	bone
27	chr12:26352800-26356400	Weak transcription	Brain Anterior Caudate	brain
28	chr12:26352800-26357400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:26352800-26358000	Weak transcription	Colon Smooth Muscle	Colon
30	chr12:26353000-26357200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr12:26353000-26357400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr12:26353200-26355400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr12:26353200-26356200	Weak transcription	Brain Substantia Nigra	brain
34	chr12:26353600-26357600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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