Variant report

Variant	rs71438624
Chromosome Location	chr12:26347768-26347769
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12818979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12822290	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12827659	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12829316	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1531649	0.82[ASN][1000 genomes]
rs17380788	0.82[ASN][1000 genomes]
rs34371272	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34753809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4963970	0.82[ASN][1000 genomes]
rs58292015	0.82[ASN][1000 genomes]
rs59631457	0.82[ASN][1000 genomes]
rs73292989	0.82[ASN][1000 genomes]
rs73292998	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26338800-26348200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:26341800-26348000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:26341800-26348000	Weak transcription	A549	lung
6	chr12:26341800-26348000	Weak transcription	NH-A	brain
7	chr12:26341800-26348000	Weak transcription	NHEK	skin
8	chr12:26341800-26348000	Weak transcription	Osteobl	bone
9	chr12:26343600-26348000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:26346800-26347800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr12:26346800-26348000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:26347400-26348000	Weak transcription	Placenta	Placenta
13	chr12:26347600-26347800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:26347600-26348000	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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