Variant report

Variant	rs73292989
Chromosome Location	chr12:26352596-26352597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26351932..26353436-chr12:26357817..26360004,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12318480	0.89[EUR][1000 genomes]
rs12818979	1.00[ASN][1000 genomes]
rs12822290	1.00[ASN][1000 genomes]
rs12827659	1.00[ASN][1000 genomes]
rs12829316	1.00[ASN][1000 genomes]
rs1531649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380788	1.00[ASN][1000 genomes]
rs34371272	1.00[ASN][1000 genomes]
rs34753809	1.00[ASN][1000 genomes]
rs4963970	1.00[ASN][1000 genomes]
rs57749967	0.89[ASN][1000 genomes]
rs57948457	0.89[ASN][1000 genomes]
rs58292015	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58769131	0.89[ASN][1000 genomes]
rs59631457	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61139398	0.89[ASN][1000 genomes]
rs71438624	0.82[ASN][1000 genomes]
rs73292998	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26349600-26358000	Weak transcription	Fetal Intestine Small	intestine
2	chr12:26349800-26352600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26349800-26352600	Enhancers	Osteobl	bone
4	chr12:26349800-26356600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr12:26349800-26357400	Weak transcription	Ovary	ovary
6	chr12:26349800-26358000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:26350000-26352600	Enhancers	Brain Cingulate Gyrus	brain
8	chr12:26350000-26352600	Enhancers	NH-A	brain
9	chr12:26350000-26352800	Enhancers	Colon Smooth Muscle	Colon
10	chr12:26350000-26353600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:26350200-26352600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:26350200-26352600	Enhancers	Fetal Heart	heart
13	chr12:26350200-26353200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr12:26350600-26352800	Enhancers	NHDF-Ad	bronchial
15	chr12:26350600-26357600	Weak transcription	NHLF	lung
16	chr12:26351000-26355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:26351000-26357800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:26351200-26353000	Enhancers	Rectal Smooth Muscle	rectum
19	chr12:26351200-26355800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr12:26351200-26357400	Weak transcription	Right Ventricle	heart
21	chr12:26351400-26352800	Enhancers	Brain Anterior Caudate	brain
22	chr12:26351400-26353200	Enhancers	Brain Substantia Nigra	brain
23	chr12:26351400-26353600	Weak transcription	Brain Angular Gyrus	brain
24	chr12:26351400-26358000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr12:26351600-26356600	Weak transcription	Aorta	Aorta
26	chr12:26351800-26352800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:26352000-26353000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr12:26352000-26356600	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:26352000-26357400	Weak transcription	Left Ventricle	heart
30	chr12:26352000-26357800	Weak transcription	Small Intestine	intestine
31	chr12:26352000-26358000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr12:26352200-26356600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr12:26352200-26357800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:26352200-26365200	Weak transcription	HSMMtube	muscle
35	chr12:26352400-26355000	Weak transcription	HSMM	muscle
36	chr12:26352400-26356600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr12:26352400-26357000	Weak transcription	Brain Hippocampus Middle	brain

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