Variant report

Variant	rs58772509
Chromosome Location	chr13:92603156-92603157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1409501	1.00[EUR][1000 genomes]
rs1409502	1.00[EUR][1000 genomes]
rs1411743	1.00[EUR][1000 genomes]
rs16946937	1.00[EUR][1000 genomes]
rs58841974	1.00[EUR][1000 genomes]
rs61049774	1.00[EUR][1000 genomes]
rs73620031	1.00[EUR][1000 genomes]
rs73623542	1.00[EUR][1000 genomes]
rs7997781	1.00[EUR][1000 genomes]
rs9589376	0.90[AFR][1000 genomes]
rs9589404	1.00[EUR][1000 genomes]
rs9589405	1.00[EUR][1000 genomes]
rs9589408	1.00[EUR][1000 genomes]
rs9589421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv528318	chr13:92575622-92607374	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv900886	chr13:92576149-92626399	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92602000-92603600	Weak transcription	Fetal Brain Female	brain
2	chr13:92603000-92603200	Active TSS	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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