Variant report

Variant	rs58841974
Chromosome Location	chr13:92646206-92646207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1409501	1.00[EUR][1000 genomes]
rs1409502	1.00[EUR][1000 genomes]
rs1411743	1.00[EUR][1000 genomes]
rs16946937	1.00[EUR][1000 genomes]
rs56906091	1.00[EUR][1000 genomes]
rs58772509	1.00[EUR][1000 genomes]
rs61049774	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73620031	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73622795	1.00[EUR][1000 genomes]
rs73623542	1.00[EUR][1000 genomes]
rs7997781	1.00[EUR][1000 genomes]
rs9589404	1.00[EUR][1000 genomes]
rs9589405	1.00[EUR][1000 genomes]
rs9589408	1.00[EUR][1000 genomes]
rs9589421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92645200-92646400	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:92645400-92647000	Enhancers	Brain Substantia Nigra	brain
3	chr13:92645800-92648400	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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