Variant report
| Variant | rs73622795 |
|---|---|
| Chromosome Location | chr13:92832930-92832931 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:91998776..92000555-chr13:92831916..92834550,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000215417 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1409501 | 1.00[EUR][1000 genomes] |
| rs1409502 | 1.00[EUR][1000 genomes] |
| rs1411743 | 1.00[EUR][1000 genomes] |
| rs16946937 | 1.00[EUR][1000 genomes] |
| rs56906091 | 0.99[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58841974 | 1.00[EUR][1000 genomes] |
| rs61049774 | 1.00[EUR][1000 genomes] |
| rs7336333 | 1.00[EUR][1000 genomes] |
| rs73620031 | 1.00[EUR][1000 genomes] |
| rs73623542 | 1.00[EUR][1000 genomes] |
| rs73624838 | 1.00[EUR][1000 genomes] |
| rs73627730 | 1.00[AMR][1000 genomes] |
| rs7990014 | 1.00[EUR][1000 genomes] |
| rs7997781 | 1.00[EUR][1000 genomes] |
| rs9589404 | 1.00[EUR][1000 genomes] |
| rs9589405 | 1.00[EUR][1000 genomes] |
| rs9589408 | 1.00[EUR][1000 genomes] |
| rs9589421 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv456066 | chr13:92694581-92884370 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv562723 | chr13:92694581-92884370 | Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035365 | chr13:92805325-92926114 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1053468 | chr13:92814581-92893231 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
