Variant report

Variant	rs7997781
Chromosome Location	chr13:92755867-92755868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1409501	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1409502	1.00[EUR][1000 genomes]
rs1411743	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16946937	1.00[EUR][1000 genomes]
rs56906091	1.00[EUR][1000 genomes]
rs58772509	1.00[EUR][1000 genomes]
rs58841974	1.00[EUR][1000 genomes]
rs61049774	1.00[EUR][1000 genomes]
rs7336333	1.00[EUR][1000 genomes]
rs73620031	1.00[EUR][1000 genomes]
rs73622795	1.00[EUR][1000 genomes]
rs73623542	1.00[EUR][1000 genomes]
rs73624838	1.00[EUR][1000 genomes]
rs7990014	1.00[EUR][1000 genomes]
rs9589404	1.00[EUR][1000 genomes]
rs9589405	1.00[EUR][1000 genomes]
rs9589408	1.00[EUR][1000 genomes]
rs9589421	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv900889	chr13:92651148-92772499	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv900890	chr13:92651148-92808689	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv900891	chr13:92668623-92757118	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900894	chr13:92671868-92772499	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv456066	chr13:92694581-92884370	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv562723	chr13:92694581-92884370	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv900899	chr13:92705979-92779664	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900900	chr13:92705979-92787844	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900901	chr13:92727985-92772499	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92754200-92756200	Enhancers	Ovary	ovary
2	chr13:92754200-92757200	Enhancers	Fetal Lung	lung
3	chr13:92755000-92756600	Enhancers	Fetal Kidney	kidney
4	chr13:92755200-92756400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:92755200-92756400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:92755600-92756000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:92755600-92756400	Enhancers	Fetal Heart	heart
8	chr13:92755800-92756200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:92755800-92756400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:92755800-92756400	Enhancers	Colon Smooth Muscle	Colon
11	chr13:92755800-92756400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr13:92755800-92756600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:92755800-92756600	Enhancers	Fetal Intestine Large	intestine
14	chr13:92755800-92756600	Enhancers	Fetal Stomach	stomach
15	chr13:92755800-92757800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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