Variant report

Variant	rs587793
Chromosome Location	chr11:119882896-119882897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:119882522-119883031	H1-neurons	neurons:	n/a	n/a
2	REST	chr11:119882410-119883064	H1-neurons	neurons:	n/a	n/a
3	EBF1	chr11:119882857-119883190	GM12878	blood:	n/a	chr11:119883038-119883047 chr11:119883038-119883047 chr11:119883036-119883049
4	REST	chr11:119882319-119883226	H1-neurons	neurons:	n/a	chr11:119883197-119883215

Variant related genes	Relation type
ENSG00000255216	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1790469	0.84[ASN][1000 genomes]
rs1893394	0.87[ASN][1000 genomes]
rs2850802	0.82[EUR][1000 genomes]
rs582545	0.88[ASN][1000 genomes]
rs584620	0.90[ASN][1000 genomes]
rs587308	0.90[ASN][1000 genomes]
rs587806	0.92[ASN][1000 genomes]
rs603179	0.93[ASN][1000 genomes]
rs630332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs635335	0.88[ASN][1000 genomes]
rs643377	0.88[ASN][1000 genomes]
rs651202	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs669812	0.91[ASN][1000 genomes]
rs681569	0.88[ASN][1000 genomes]
rs688857	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv524406	chr11:119873404-119893179	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2762948	chr11:119876596-119901422	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119879600-119889200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119880200-119885000	Enhancers	Esophagus	oesophagus
3	chr11:119880400-119884200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:119880800-119883800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119880800-119884800	Enhancers	Brain Substantia Nigra	brain
6	chr11:119881000-119883200	Weak transcription	Right Ventricle	heart
7	chr11:119881200-119884600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119881400-119884400	Enhancers	Brain Hippocampus Middle	brain
9	chr11:119881600-119885800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:119881800-119884000	Enhancers	Brain Anterior Caudate	brain
11	chr11:119881800-119884000	Weak transcription	Fetal Thymus	thymus
12	chr11:119881800-119884800	Enhancers	Brain Germinal Matrix	brain
13	chr11:119881800-119890000	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:119882000-119885400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr11:119882200-119885000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:119882400-119883200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:119882400-119883200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:119882600-119883000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr11:119882600-119883000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:119882600-119883400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr11:119882600-119884600	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links