Variant report

Variant	rs669812
Chromosome Location	chr11:119901422-119901423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10790363	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1790469	0.92[ASN][1000 genomes]
rs1893394	0.86[ASN][1000 genomes]
rs2850802	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs569044	1.00[LWK][hapmap]
rs582545	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs584620	0.89[ASN][1000 genomes]
rs587308	0.89[ASN][1000 genomes]
rs587793	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.91[ASN][1000 genomes]
rs587806	0.84[ASN][1000 genomes]
rs591596	0.85[ASN][1000 genomes]
rs592565	0.85[ASN][1000 genomes]
rs593252	0.82[EUR][1000 genomes]
rs593319	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs597253	0.86[ASN][1000 genomes]
rs603179	0.97[ASN][1000 genomes]
rs630332	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs635335	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs640663	0.85[ASN][1000 genomes]
rs643377	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs645233	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs651202	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs681569	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688857	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2762948	chr11:119876596-119901422	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119896200-119902200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119896200-119902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:119899600-119902200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119901000-119901600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:119901200-119901800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:119901400-119901600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:119901400-119901600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:119901400-119901600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:119901400-119902800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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