Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10790363	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1790469	0.95[ASN][1000 genomes]
rs1893394	0.85[ASN][1000 genomes]
rs2850802	0.82[EUR][1000 genomes]
rs582545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584620	0.88[ASN][1000 genomes]
rs587308	0.88[ASN][1000 genomes]
rs587793	0.88[ASN][1000 genomes]
rs587806	0.82[ASN][1000 genomes]
rs591596	0.88[ASN][1000 genomes]
rs592565	0.88[ASN][1000 genomes]
rs593319	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs597253	0.89[ASN][1000 genomes]
rs603179	0.94[ASN][1000 genomes]
rs630332	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs635335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640663	0.88[ASN][1000 genomes]
rs642878	0.81[EUR][1000 genomes]
rs643377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645233	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs651202	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs669812	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119911400-119915400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119914000-119914800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:119914200-119914800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:119914200-119914800	Enhancers	Esophagus	oesophagus
5	chr11:119914200-119915600	Enhancers	Fetal Intestine Small	intestine
6	chr11:119914400-119914800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:119914400-119914800	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:119914400-119914800	Enhancers	Fetal Stomach	stomach
9	chr11:119914400-119915200	Enhancers	Fetal Intestine Large	intestine
10	chr11:119914400-119915400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:119914600-119915000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:119914600-119915200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:119914600-119915200	Enhancers	Fetal Muscle Leg	muscle
14	chr11:119914600-119915400	Enhancers	HUES64 Cell Line	embryonic stem cell

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