Variant report

Variant	rs58782040
Chromosome Location	chr1:152387745-152387746
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10157860	1.00[EUR][1000 genomes]
rs11805976	1.00[EUR][1000 genomes]
rs11807452	1.00[EUR][1000 genomes]
rs11807465	1.00[EUR][1000 genomes]
rs11810565	1.00[EUR][1000 genomes]
rs12062763	1.00[EUR][1000 genomes]
rs12068970	1.00[EUR][1000 genomes]
rs12071768	1.00[EUR][1000 genomes]
rs12076464	1.00[EUR][1000 genomes]
rs16833974	1.00[EUR][1000 genomes]
rs1923493	0.90[AFR][1000 genomes]
rs3120668	1.00[EUR][1000 genomes]
rs3120669	1.00[EUR][1000 genomes]
rs477291	1.00[EUR][1000 genomes]
rs506407	1.00[EUR][1000 genomes]
rs60958057	1.00[EUR][1000 genomes]
rs61250742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61676926	1.00[EUR][1000 genomes]
rs61749580	1.00[EUR][1000 genomes]
rs6587670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6667236	1.00[EUR][1000 genomes]
rs6669029	1.00[EUR][1000 genomes]
rs6673073	1.00[EUR][1000 genomes]
rs6681629	1.00[EUR][1000 genomes]
rs6695830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72997398	1.00[EUR][1000 genomes]
rs72999303	1.00[EUR][1000 genomes]
rs73001316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001318	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001338	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73007787	1.00[EUR][1000 genomes]
rs73007794	1.00[EUR][1000 genomes]
rs73007801	1.00[EUR][1000 genomes]
rs7514641	1.00[EUR][1000 genomes]
rs7521839	0.90[AFR][1000 genomes]
rs7549175	1.00[EUR][1000 genomes]
rs7554863	1.00[EUR][1000 genomes]
rs9725444	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv516541	chr1:152376710-152390452	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152384800-152388200	Weak transcription	Spleen	Spleen
2	chr1:152387000-152390600	Weak transcription	Esophagus	oesophagus

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