Variant report

Variant	rs58800887
Chromosome Location	chr3:85845320-85845321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1448606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2009641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4519715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57177092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995857	0.81[AFR][1000 genomes]
rs61371129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61678625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6770050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6792733	0.84[AFR][1000 genomes]
rs73843505	0.81[AFR][1000 genomes]
rs73843506	0.81[AFR][1000 genomes]
rs73845636	0.82[AFR][1000 genomes]
rs73845640	0.83[AFR][1000 genomes]
rs73845643	0.81[AFR][1000 genomes]
rs73845644	0.81[AFR][1000 genomes]
rs73845645	0.84[AFR][1000 genomes]
rs73845646	0.84[AFR][1000 genomes]
rs73845647	0.82[AFR][1000 genomes]
rs73845664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845669	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845688	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845689	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7613828	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650537	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85844400-85845400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:85844400-85845400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:85844600-85845800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:85844800-85845600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:85845000-85845400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:85845000-85845400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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