Variant report

Variant	rs59995857
Chromosome Location	chr3:85845420-85845421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55816776	1.00[AMR][1000 genomes]
rs55869020	1.00[AMR][1000 genomes]
rs55897676	1.00[AMR][1000 genomes]
rs58800887	0.81[AFR][1000 genomes]
rs60667710	1.00[AMR][1000 genomes]
rs73843520	1.00[AMR][1000 genomes]
rs73843682	1.00[AMR][1000 genomes]
rs73843686	1.00[AMR][1000 genomes]
rs73843689	1.00[AMR][1000 genomes]
rs73845605	1.00[AMR][1000 genomes]
rs73845610	1.00[AMR][1000 genomes]
rs73845611	1.00[AMR][1000 genomes]
rs73845632	1.00[AMR][1000 genomes]
rs73845634	1.00[AMR][1000 genomes]
rs73845639	1.00[AMR][1000 genomes]
rs73845663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85844600-85845800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:85844800-85845600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:85845400-85845600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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