Variant report

Variant	rs55869020
Chromosome Location	chr3:85672038-85672039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55747506	1.00[AMR][1000 genomes]
rs55816776	1.00[AMR][1000 genomes]
rs56375545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58822298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995857	1.00[AMR][1000 genomes]
rs60667710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843686	1.00[AMR][1000 genomes]
rs73843689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843696	1.00[AFR][1000 genomes]
rs73845605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845610	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845632	1.00[AMR][1000 genomes]
rs73845634	1.00[AMR][1000 genomes]
rs73845639	1.00[AMR][1000 genomes]
rs73845663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1006360	chr3:85597755-85683081	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536629	chr3:85597755-85683081	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590907	chr3:85619451-85694987	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877101	chr3:85619451-85710336	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv877102	chr3:85639455-85690143	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv877103	chr3:85639455-85702868	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv590908	chr3:85653433-85687552	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv460750	chr3:85653433-85690143	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv590909	chr3:85653433-85690143	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv460752	chr3:85653433-85694987	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv590910	chr3:85653433-85694987	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv877105	chr3:85653433-85697614	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85671600-85672200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:85671600-85672600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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