Variant report

Variant	rs73843625
Chromosome Location	chr3:85514380-85514381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:85512744..85515419-chr3:85552866..85554640,2	K562	blood:
2	chr3:85510863..85513429-chr3:85513950..85516943,2	MCF-7	breast:
3	chr3:85513919..85516830-chr3:85552866..85555627,2	K562	blood:
4	chr3:85512384..85516287-chr3:85548853..85551591,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55747506	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55869020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56375545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57803625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58822298	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59749337	1.00[AMR][1000 genomes]
rs60667710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843608	1.00[AMR][1000 genomes]
rs73843628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843659	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843661	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843680	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843682	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843686	1.00[AMR][1000 genomes]
rs73843689	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843696	0.83[AFR][1000 genomes]
rs73845433	1.00[AMR][1000 genomes]
rs73845447	1.00[AMR][1000 genomes]
rs73845471	1.00[AMR][1000 genomes]
rs73845473	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845474	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845476	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845484	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845488	0.83[AFR][1000 genomes]
rs73845605	1.00[AMR][1000 genomes]
rs9810831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85512600-85522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:85513000-85526000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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