Variant report

Variant	rs73845433
Chromosome Location	chr3:85398366-85398367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12107265	1.00[AMR][1000 genomes]
rs55747506	1.00[AMR][1000 genomes]
rs56375545	1.00[AMR][1000 genomes]
rs57803625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59749337	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60511748	1.00[AMR][1000 genomes]
rs73843298	1.00[AMR][1000 genomes]
rs73843608	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843625	1.00[AMR][1000 genomes]
rs73843628	1.00[AMR][1000 genomes]
rs73843629	1.00[AMR][1000 genomes]
rs73843632	1.00[AMR][1000 genomes]
rs73845447	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845471	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845473	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845485	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845488	0.96[AFR][1000 genomes]
rs9810831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv870153	chr3:85326695-85426936	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1008956	chr3:85394816-85460325	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv536620	chr3:85394816-85460325	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
13	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85397800-85398400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:85398200-85398800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:85398200-85399000	Active TSS	Brain Cingulate Gyrus	brain
4	chr3:85398200-85399200	Active TSS	Brain Hippocampus Middle	brain
5	chr3:85398200-85400200	Active TSS	Brain Anterior Caudate	brain

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