Variant report

Variant	rs73845484
Chromosome Location	chr3:85446903-85446904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55747506	1.00[AMR][1000 genomes]
rs56375545	1.00[AMR][1000 genomes]
rs57803625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58822298	1.00[AMR][1000 genomes]
rs59749337	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843608	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843625	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843659	1.00[AMR][1000 genomes]
rs73843661	1.00[AMR][1000 genomes]
rs73843662	1.00[AMR][1000 genomes]
rs73845433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845447	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845471	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845488	1.00[AFR][1000 genomes]
rs9810831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008956	chr3:85394816-85460325	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv536620	chr3:85394816-85460325	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85416200-85450200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85446600-85450200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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