Variant report

Variant	rs55747506
Chromosome Location	chr3:85504075-85504076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85503980..85505718-chr3:85553016..85554877,2	K562	blood:
2	chr3:85503835..85505718-chr3:85553016..85554877,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55869020	1.00[AMR][1000 genomes]
rs56375545	1.00[AMR][1000 genomes]
rs57803625	1.00[AMR][1000 genomes]
rs58450413	0.93[AFR][1000 genomes]
rs58822298	1.00[AMR][1000 genomes]
rs59388186	0.93[AFR][1000 genomes]
rs59749337	1.00[AMR][1000 genomes]
rs60667710	1.00[AMR][1000 genomes]
rs73843608	1.00[AMR][1000 genomes]
rs73843625	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843628	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843629	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843632	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843659	1.00[AMR][1000 genomes]
rs73843661	1.00[AMR][1000 genomes]
rs73843662	1.00[AMR][1000 genomes]
rs73843680	1.00[AMR][1000 genomes]
rs73843682	1.00[AMR][1000 genomes]
rs73843686	1.00[AMR][1000 genomes]
rs73843689	1.00[AMR][1000 genomes]
rs73845433	1.00[AMR][1000 genomes]
rs73845447	1.00[AMR][1000 genomes]
rs73845471	1.00[AMR][1000 genomes]
rs73845473	1.00[AMR][1000 genomes]
rs73845474	1.00[AMR][1000 genomes]
rs73845476	1.00[AMR][1000 genomes]
rs73845484	1.00[AMR][1000 genomes]
rs73845485	1.00[AMR][1000 genomes]
rs73845605	1.00[AMR][1000 genomes]
rs9810831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv522784	chr3:85480724-85507231	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85503800-85504800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:85504000-85504600	Weak transcription	Brain Anterior Caudate	brain

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