Variant report

Variant	rs73845634
Chromosome Location	chr3:85799527-85799528
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55816776	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55869020	1.00[AMR][1000 genomes]
rs55897676	1.00[AMR][1000 genomes]
rs58822298	1.00[AMR][1000 genomes]
rs59995857	1.00[AMR][1000 genomes]
rs60667710	1.00[AMR][1000 genomes]
rs73843520	1.00[AMR][1000 genomes]
rs73843659	1.00[AMR][1000 genomes]
rs73843661	1.00[AMR][1000 genomes]
rs73843662	1.00[AMR][1000 genomes]
rs73843680	1.00[AMR][1000 genomes]
rs73843682	1.00[AMR][1000 genomes]
rs73843686	1.00[AMR][1000 genomes]
rs73843689	1.00[AMR][1000 genomes]
rs73845605	1.00[AMR][1000 genomes]
rs73845610	1.00[AMR][1000 genomes]
rs73845611	1.00[AMR][1000 genomes]
rs73845632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845639	1.00[AMR][1000 genomes]
rs73845663	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv980064	chr3:85795339-85805553	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85796200-85799800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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