Variant report

Variant	rs73845610
Chromosome Location	chr3:85708493-85708494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55816776	1.00[AMR][1000 genomes]
rs55869020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56375545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58822298	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995857	1.00[AMR][1000 genomes]
rs60667710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843632	1.00[AMR][1000 genomes]
rs73843659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843682	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843686	1.00[AMR][1000 genomes]
rs73843689	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73843696	0.91[AFR][1000 genomes]
rs73845605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845632	1.00[AMR][1000 genomes]
rs73845634	1.00[AMR][1000 genomes]
rs73845639	1.00[AMR][1000 genomes]
rs73845663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877101	chr3:85619451-85710336	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3336328	chr3:85706862-85708860	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85695400-85708800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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