Variant report

Variant	rs6792733
Chromosome Location	chr3:85815228-85815229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1448606	0.81[AFR][1000 genomes]
rs2009641	1.00[CEU][hapmap];0.83[AFR][1000 genomes]
rs2122042	0.85[ASW][hapmap];0.88[LWK][hapmap];0.85[YRI][hapmap]
rs2875492	1.00[CEU][hapmap]
rs4519715	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs56179594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57177092	0.81[AFR][1000 genomes]
rs58800887	0.84[AFR][1000 genomes]
rs61360156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61678625	0.81[AFR][1000 genomes]
rs6770050	0.85[AFR][1000 genomes]
rs73845636	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73845638	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73845640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845642	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845643	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845664	0.85[AFR][1000 genomes]
rs73845665	0.85[AFR][1000 genomes]
rs73845669	0.81[AFR][1000 genomes]
rs7612504	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs7613828	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs7615807	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7620339	0.92[ASW][hapmap];0.88[LWK][hapmap];0.80[YRI][hapmap]
rs7626235	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs9818122	0.85[ASW][hapmap];0.88[LWK][hapmap];0.85[YRI][hapmap]
rs9819299	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85814800-85815400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:85815000-85815600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:85815200-85815400	Enhancers	HUES48 Cell Line	embryonic stem cell

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