Variant report

Variant	rs58811351
Chromosome Location	chr7:41261358-41261359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41255712..41257388-chr7:41260723..41262857,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10214983	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10215204	0.80[EUR][1000 genomes]
rs10225596	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10228281	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237505	0.80[EUR][1000 genomes]
rs10245806	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10245865	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10260526	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266295	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17691173	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17691214	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370881	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28534868	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28537692	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28662380	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296946	1.00[ASN][1000 genomes]
rs58773259	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59159806	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59455753	1.00[ASN][1000 genomes]
rs60824519	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61187499	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61586765	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951284	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687949	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687950	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41257400-41262400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:41257800-41261600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:41257800-41261800	Weak transcription	HMEC	breast
4	chr7:41259200-41261800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:41259400-41263800	Weak transcription	NH-A	brain
6	chr7:41259400-41278400	Weak transcription	HSMM	muscle
7	chr7:41260800-41264800	Enhancers	Hela-S3	cervix
8	chr7:41261000-41261400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links