Variant report

Variant	rs28534868
Chromosome Location	chr7:41278337-41278338
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41277967..41280193-chr7:41283626..41286439,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10214983	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10215204	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10225596	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10228281	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10237505	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10244988	0.85[EUR][1000 genomes]
rs10245806	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10245865	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10255353	0.85[EUR][1000 genomes]
rs10260526	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10266295	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10266444	0.84[EUR][1000 genomes]
rs17691173	0.91[AMR][1000 genomes]
rs17691214	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2158559	0.85[EUR][1000 genomes]
rs28370881	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28482024	0.88[EUR][1000 genomes]
rs28537692	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28662380	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28689699	0.85[EUR][1000 genomes]
rs35759722	0.82[ASN][1000 genomes]
rs58052804	0.82[ASN][1000 genomes]
rs58773259	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58811351	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59159806	0.85[AMR][1000 genomes]
rs60824519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61187499	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61586765	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6951284	0.85[AMR][1000 genomes]
rs73687949	0.85[AMR][1000 genomes]
rs73687950	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3411047	chr7:41278282-41278812	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41275800-41278600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:41277200-41279200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:41277200-41279200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:41277200-41279200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:41277200-41279400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:41277200-41279400	Enhancers	Hela-S3	cervix
9	chr7:41277200-41279400	Enhancers	NHDF-Ad	bronchial
10	chr7:41277400-41279200	Enhancers	NHEK	skin
11	chr7:41277400-41279400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:41277400-41279600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:41277400-41279600	Enhancers	HMEC	breast
14	chr7:41277400-41279600	Enhancers	Osteobl	bone
15	chr7:41277600-41279200	Enhancers	NHLF	lung
16	chr7:41277600-41279400	Enhancers	HUVEC	blood vessel
17	chr7:41277800-41278600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:41278000-41278400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:41278000-41279200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:41278000-41279200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:41278200-41278600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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