Variant report

Variant	rs35759722
Chromosome Location	chr7:41283105-41283106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10214983	1.00[ASN][1000 genomes]
rs10225596	1.00[ASN][1000 genomes]
rs10237505	0.90[ASN][1000 genomes]
rs10244988	0.82[ASN][1000 genomes]
rs10255353	0.82[ASN][1000 genomes]
rs10263411	0.90[ASN][1000 genomes]
rs10266444	0.82[ASN][1000 genomes]
rs2107724	0.82[ASN][1000 genomes]
rs2158559	0.82[ASN][1000 genomes]
rs28482024	0.82[ASN][1000 genomes]
rs28534868	0.82[ASN][1000 genomes]
rs28537692	1.00[ASN][1000 genomes]
rs28689699	0.82[ASN][1000 genomes]
rs4296946	0.93[AMR][1000 genomes]
rs58052804	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs59455753	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:41278600-41283800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:41279200-41283800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:41279200-41287200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:41279400-41285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41279400-41287200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:41279600-41283600	Weak transcription	Osteobl	bone
8	chr7:41279600-41283800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:41279600-41285400	Weak transcription	HMEC	breast
10	chr7:41280400-41286200	Weak transcription	Hela-S3	cervix
11	chr7:41281600-41283800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:41282200-41283800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:41282800-41283200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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