Variant report

Variant	rs58052804
Chromosome Location	chr7:41271607-41271608
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10225596	0.81[AMR][1000 genomes]
rs10228281	0.81[AMR][1000 genomes]
rs10245806	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10245865	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10260526	0.81[AMR][1000 genomes]
rs10266295	1.00[ASN][1000 genomes]
rs2107724	0.86[AFR][1000 genomes]
rs28534868	0.82[ASN][1000 genomes]
rs28662380	0.81[AMR][1000 genomes]
rs35759722	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4296946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57080178	0.81[AMR][1000 genomes]
rs58773259	0.81[AMR][1000 genomes]
rs59455753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61187499	0.81[AMR][1000 genomes]
rs61586765	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41264800-41271800	Weak transcription	Hela-S3	cervix
3	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:41271200-41273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:41271400-41272000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:41271400-41272000	Enhancers	Osteobl	bone
7	chr7:41271400-41272200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:41271400-41272200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:41271600-41271800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:41271600-41272000	Enhancers	NHDF-Ad	bronchial
11	chr7:41271600-41272200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:41271600-41272200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:41271600-41272200	Enhancers	HMEC	breast
14	chr7:41271600-41272200	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links