Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10225596	0.81[AMR][1000 genomes]
rs10228281	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10245806	0.81[AMR][1000 genomes]
rs10245865	0.81[AMR][1000 genomes]
rs10260526	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17691173	1.00[ASN][1000 genomes]
rs17691214	1.00[ASN][1000 genomes]
rs28370881	1.00[ASN][1000 genomes]
rs28662380	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35759722	0.93[AMR][1000 genomes]
rs4296946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57080178	0.81[AMR][1000 genomes]
rs58052804	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58773259	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58811351	1.00[ASN][1000 genomes]
rs59159806	1.00[ASN][1000 genomes]
rs60824519	1.00[ASN][1000 genomes]
rs61187499	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61586765	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6951284	1.00[ASN][1000 genomes]
rs73687949	1.00[ASN][1000 genomes]
rs73687950	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534465	chr7:41224437-41443498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41259400-41278400	Weak transcription	HSMM	muscle
2	chr7:41264800-41271800	Weak transcription	Hela-S3	cervix
3	chr7:41265000-41296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:41268000-41270800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: