Variant report

Variant	rs57080178
Chromosome Location	chr7:41175231-41175232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10237832	1.00[ASN][1000 genomes]
rs10237840	1.00[ASN][1000 genomes]
rs10251668	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264020	1.00[ASN][1000 genomes]
rs13438627	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623158	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623425	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690493	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473068	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627677	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29507	1.00[ASN][1000 genomes]
rs4296946	0.81[AMR][1000 genomes]
rs58052804	0.81[AMR][1000 genomes]
rs58767715	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59455753	0.81[AMR][1000 genomes]
rs6966665	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321554	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687944	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41168200-41175600	Enhancers	Fetal Brain Male	brain
2	chr7:41169000-41175400	Enhancers	Fetal Brain Female	brain
3	chr7:41171400-41175400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:41173400-41175400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:41173400-41175800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:41173600-41175600	Enhancers	HMEC	breast
7	chr7:41174000-41177200	Weak transcription	Right Atrium	heart
8	chr7:41174400-41177200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:41174400-41187800	Weak transcription	NHLF	lung
10	chr7:41174800-41175400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:41175200-41175400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:41175200-41175400	Enhancers	Spleen	Spleen
13	chr7:41175200-41176200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:41175200-41176200	Enhancers	Esophagus	oesophagus
15	chr7:41175200-41176600	Strong transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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