Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41203420..41205145-chr7:41207158..41208668,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10237206	0.98[EUR][1000 genomes]
rs10237832	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237840	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257259	0.97[EUR][1000 genomes]
rs10261454	0.97[EUR][1000 genomes]
rs10261869	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10264020	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274378	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17623158	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623425	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690493	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473068	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627677	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29507	1.00[ASN][1000 genomes]
rs57080178	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767715	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966665	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321554	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687944	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687945	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73687947	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41202000-41204200	Enhancers	NHDF-Ad	bronchial
3	chr7:41202400-41204000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:41203400-41204200	Enhancers	HSMMtube	muscle
5	chr7:41203400-41204400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:41203400-41204600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:41203600-41204000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:41203600-41204400	Enhancers	HSMM	muscle
9	chr7:41203600-41204600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:41203800-41204000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:41203800-41204400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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