Variant report
| Variant | rs10264020 |
|---|---|
| Chromosome Location | chr7:41205686-41205687 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10237206 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10237832 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10237840 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10251668 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10257259 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10261454 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10261869 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10274378 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13438627 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17623158 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17623425 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17690493 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28473068 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28627677 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs29507 | 0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57080178 | 1.00[ASN][1000 genomes] |
| rs58767715 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6966665 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73321554 | 1.00[ASN][1000 genomes] |
| rs73687944 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73687945 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73687947 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034605 | chr7:41096638-41222426 | Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv887989 | chr7:41125447-41337044 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1028983 | chr7:41165668-41635954 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10264020 | TBRG4 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:41189400-41222400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:41204800-41209200 | Weak transcription | NHDF-Ad | bronchial |
