Variant report

Variant	rs6966665
Chromosome Location	chr7:41163912-41163913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10237206	0.83[EUR][1000 genomes]
rs10237832	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237840	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251668	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257259	0.82[EUR][1000 genomes]
rs10261454	0.82[EUR][1000 genomes]
rs10261869	0.83[EUR][1000 genomes]
rs10264020	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274378	0.83[EUR][1000 genomes]
rs13438627	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623158	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623425	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690493	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473068	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627677	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29507	1.00[ASN][1000 genomes]
rs57080178	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767715	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321554	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687944	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687945	0.83[EUR][1000 genomes]
rs73687947	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41161600-41164200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:41161600-41164800	Weak transcription	NHDF-Ad	bronchial
4	chr7:41162800-41164600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:41162800-41164600	Weak transcription	HMEC	breast
6	chr7:41163200-41165600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:41163200-41167600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:41163600-41164400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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