Variant report

Variant	rs73321554
Chromosome Location	chr7:41145140-41145141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10237832	1.00[ASN][1000 genomes]
rs10237840	1.00[ASN][1000 genomes]
rs10251668	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264020	1.00[ASN][1000 genomes]
rs13438627	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623158	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623425	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690493	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473068	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627677	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29507	1.00[ASN][1000 genomes]
rs57080178	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767715	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966665	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687944	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41143200-41146200	Weak transcription	Hela-S3	cervix
3	chr7:41143400-41147000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:41144200-41146200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:41144400-41146200	Weak transcription	NHEK	skin
6	chr7:41144800-41145600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:41144800-41146200	Weak transcription	HMEC	breast
8	chr7:41144800-41146400	Weak transcription	NHDF-Ad	bronchial
9	chr7:41144800-41147000	Weak transcription	NH-A	brain
10	chr7:41144800-41147200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:41144800-41147200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:41145000-41145600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:41145000-41147400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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