Variant report

Variant	rs17623158
Chromosome Location	chr7:41149228-41149229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41148550..41150535-chr7:41726571..41728919,2	MCF-7	breast:
2	chr7:41093416..41095310-chr7:41148067..41150545,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10237206	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10237832	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237840	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251668	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257259	0.88[AMR][1000 genomes]
rs10261454	0.91[AMR][1000 genomes]
rs10261869	0.80[EUR][1000 genomes]
rs10264020	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10274378	0.80[EUR][1000 genomes]
rs10486706	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1117542	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13438627	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622724	0.84[AMR][1000 genomes]
rs17622819	0.87[AMR][1000 genomes]
rs17622929	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17622952	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17623051	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17623425	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690104	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17690295	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690378	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690408	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473068	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627677	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29507	1.00[ASN][1000 genomes]
rs41409244	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs41449551	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57080178	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767715	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59566101	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6966665	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321554	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687944	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687945	0.80[EUR][1000 genomes]
rs73687947	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41145600-41149600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:41146200-41151000	Enhancers	HMEC	breast
4	chr7:41147800-41151000	Enhancers	NHEK	skin
5	chr7:41147800-41151200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:41148000-41150800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:41148000-41153400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:41148200-41149600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:41148200-41150200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:41148400-41152800	Weak transcription	NHDF-Ad	bronchial
11	chr7:41148400-41153400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:41148600-41149800	Weak transcription	HSMM	muscle

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