Variant report

Variant	rs17690378
Chromosome Location	chr7:41120374-41120375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10237206	0.81[AMR][1000 genomes]
rs10251668	0.81[AMR][1000 genomes]
rs10486706	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs1117542	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs17622696	0.90[AMR][1000 genomes]
rs17622724	0.97[AMR][1000 genomes]
rs17622819	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17622929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623158	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17623425	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690070	0.90[AMR][1000 genomes]
rs17690104	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17690295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690493	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28473068	0.81[AMR][1000 genomes]
rs28627677	0.81[AMR][1000 genomes]
rs41409244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41449551	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56297695	0.91[AMR][1000 genomes]
rs58334883	0.80[AMR][1000 genomes]
rs58767715	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs59566101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319570	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41112000-41127800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41118200-41121000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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