Variant report

Variant	rs17623425
Chromosome Location	chr7:41197374-41197375
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41196553..41198239-chr7:41199242..41201799,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10237206	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10237832	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237840	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251668	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257259	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261454	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261869	0.95[EUR][1000 genomes]
rs10264020	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274378	0.95[EUR][1000 genomes]
rs10486706	0.84[AMR][1000 genomes]
rs1117542	0.84[AMR][1000 genomes]
rs13438627	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622724	0.84[AMR][1000 genomes]
rs17622819	0.87[AMR][1000 genomes]
rs17622929	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17622952	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17623051	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17623158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690104	0.81[AMR][1000 genomes]
rs17690295	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690378	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690408	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17690493	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473068	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627677	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29507	1.00[ASN][1000 genomes]
rs41409244	0.87[AMR][1000 genomes]
rs41449551	0.87[AMR][1000 genomes]
rs57080178	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767715	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59566101	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6966665	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321554	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687944	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687945	0.95[EUR][1000 genomes]
rs73687947	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3394436	chr7:41197327-41201125	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41195600-41197800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:41196200-41198200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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