Variant report

Variant	rs73687947
Chromosome Location	chr7:41222551-41222552
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10237206	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237832	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10237840	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10251668	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10257259	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261454	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261869	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264020	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10274378	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438627	0.97[EUR][1000 genomes]
rs17623158	0.91[AMR][1000 genomes]
rs17623425	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17690493	0.91[AMR][1000 genomes]
rs28473068	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28627677	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58767715	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6966665	0.82[EUR][1000 genomes]
rs73687944	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73687945	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3419925	chr7:41221652-41224200	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3404317	chr7:41222327-41223625	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
2	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
3	chr7:41222000-41222600	Enhancers	HUVEC	blood vessel
4	chr7:41222000-41222600	Enhancers	NHEK	skin
5	chr7:41222200-41222600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:41222200-41222600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:41222200-41223600	Enhancers	HMEC	breast
8	chr7:41222400-41222600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:41222400-41222800	Weak transcription	Ovary	ovary
10	chr7:41222400-41223400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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