Variant report

Variant	rs10257259
Chromosome Location	chr7:41219551-41219552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10237206	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237832	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10237840	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10251668	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10261454	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261869	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264020	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10274378	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438627	0.97[EUR][1000 genomes]
rs17623158	0.88[AMR][1000 genomes]
rs17623425	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17690493	0.88[AMR][1000 genomes]
rs28473068	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28627677	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58767715	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6966665	0.82[EUR][1000 genomes]
rs73687944	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73687945	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73687947	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41189400-41222400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41215200-41226600	Weak transcription	Aorta	Aorta
3	chr7:41215400-41230400	Weak transcription	Pancreas	Pancrea
4	chr7:41218800-41222200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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