Variant report

Variant	rs17690104
Chromosome Location	chr7:41086890-41086891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41085265..41086925-chr7:41153421..41155023,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10225807	1.00[JPT][hapmap]
rs10254530	1.00[JPT][hapmap]
rs10486706	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1117542	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622696	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622724	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17622819	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17622929	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17622952	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17623051	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17623158	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17623425	0.81[AMR][1000 genomes]
rs17690070	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17690295	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17690378	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17690408	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17690493	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs41409244	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41449551	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56297695	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58334883	0.98[EUR][1000 genomes]
rs59566101	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73319570	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41083800-41092000	Weak transcription	Aorta	Aorta
2	chr7:41084800-41087000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41084800-41088000	Enhancers	Left Ventricle	heart
4	chr7:41084800-41088400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:41085000-41088000	Enhancers	Placenta	Placenta
6	chr7:41085200-41087000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:41085200-41087400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:41085200-41087400	Enhancers	Right Atrium	heart
9	chr7:41085200-41087600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:41085200-41087600	Enhancers	NH-A	brain
11	chr7:41085200-41088000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:41085200-41088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:41085200-41088000	Enhancers	NHLF	lung
14	chr7:41085200-41088400	Enhancers	NHDF-Ad	bronchial
15	chr7:41085200-41088600	Enhancers	Fetal Muscle Leg	muscle
16	chr7:41085400-41087400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:41085400-41087400	Enhancers	Osteobl	bone
18	chr7:41085400-41087800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:41085600-41088600	Enhancers	Fetal Heart	heart
20	chr7:41085800-41087000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr7:41085800-41087000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:41085800-41087600	Enhancers	Fetal Stomach	stomach
23	chr7:41085800-41087600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:41085800-41088000	Enhancers	Adipose Nuclei	Adipose
25	chr7:41086000-41091000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:41086000-41094800	Weak transcription	HSMM	muscle
27	chr7:41086200-41087000	Enhancers	Ovary	ovary
28	chr7:41086400-41087600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:41086400-41089800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:41086400-41089800	Weak transcription	HMEC	breast
31	chr7:41086600-41088000	Weak transcription	Right Ventricle	heart
32	chr7:41086800-41088000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:41086800-41088000	Enhancers	Fetal Muscle Trunk	muscle

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