Variant report

Variant	rs41409244
Chromosome Location	chr7:41092816-41092817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10237206	0.81[AMR][1000 genomes]
rs10251668	0.81[AMR][1000 genomes]
rs10486706	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1117542	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17622696	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17622724	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17622819	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622929	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17622952	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17623051	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17623158	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17623425	0.87[AMR][1000 genomes]
rs17690070	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17690104	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17690295	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17690378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17690408	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17690493	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28473068	0.81[AMR][1000 genomes]
rs28627677	0.81[AMR][1000 genomes]
rs41449551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56297695	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58334883	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767715	0.80[AMR][1000 genomes]
rs59566101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319570	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41086000-41094800	Weak transcription	HSMM	muscle
2	chr7:41087800-41093200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:41088000-41093200	Weak transcription	NHLF	lung
4	chr7:41088400-41093200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:41088400-41093200	Weak transcription	NHDF-Ad	bronchial
6	chr7:41088400-41099000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:41088600-41095000	Weak transcription	HSMMtube	muscle
8	chr7:41090200-41097000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:41091200-41094200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:41091400-41097800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:41091600-41093200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:41092000-41094200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:41092200-41094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:41092200-41094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:41092200-41094200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:41092200-41094200	Weak transcription	Fetal Stomach	stomach
17	chr7:41092200-41094600	Weak transcription	Fetal Brain Male	brain
18	chr7:41092200-41095600	Weak transcription	Ovary	ovary
19	chr7:41092200-41098800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:41092400-41094000	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:41092600-41094000	Weak transcription	Aorta	Aorta

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