Variant report

Variant	rs58822295
Chromosome Location	chr6:163504731-163504732
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11962673	1.00[AMR][1000 genomes]
rs1323637	1.00[AMR][1000 genomes]
rs16894487	1.00[AMR][1000 genomes]
rs2057502	1.00[AMR][1000 genomes]
rs2057503	1.00[AMR][1000 genomes]
rs34348407	1.00[AMR][1000 genomes]
rs55824084	1.00[AMR][1000 genomes]
rs57016827	1.00[AMR][1000 genomes]
rs73784506	1.00[AMR][1000 genomes]
rs73785706	1.00[AMR][1000 genomes]
rs73786952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786958	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786963	1.00[AMR][1000 genomes]
rs73786965	1.00[AMR][1000 genomes]
rs73786967	1.00[AMR][1000 genomes]
rs73786969	1.00[AMR][1000 genomes]
rs73786971	1.00[AMR][1000 genomes]
rs73786972	1.00[AMR][1000 genomes]
rs73786973	1.00[AMR][1000 genomes]
rs73786974	1.00[AMR][1000 genomes]
rs73786975	1.00[AMR][1000 genomes]
rs73786976	1.00[AMR][1000 genomes]
rs73786977	1.00[AMR][1000 genomes]
rs73786978	1.00[AMR][1000 genomes]
rs73786979	1.00[AMR][1000 genomes]
rs73786980	1.00[AMR][1000 genomes]
rs73786983	1.00[AMR][1000 genomes]
rs73786985	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1021433	chr6:163375760-163509866	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163500400-163506000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:163501600-163506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:163501600-163508400	Weak transcription	Pancreas	Pancrea
4	chr6:163503200-163507000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:163503800-163507400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:163503800-163507600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:163503800-163507600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:163504200-163506000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:163504200-163506600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:163504600-163504800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:163504600-163505600	Weak transcription	Fetal Heart	heart
12	chr6:163504600-163506400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:163504600-163506400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:163504600-163507400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:163504600-163507400	Enhancers	HUES64 Cell Line	embryonic stem cell

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