Variant report

Variant	rs73786969
Chromosome Location	chr6:163531931-163531932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163530518..163532397-chr6:163534746..163536959,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-9	chr6:163530440-163532004	ucscGeneNc_uc010kkg_1
2	lnc-AL078585.1-9	chr6:163531930-163532004	ucscGeneNc_uc010kkf_1

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11962673	1.00[AMR][1000 genomes]
rs1323637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2057502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2057503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34348407	1.00[AMR][1000 genomes]
rs55824084	1.00[AMR][1000 genomes]
rs57016827	1.00[AMR][1000 genomes]
rs58822295	1.00[AMR][1000 genomes]
rs73784506	1.00[AMR][1000 genomes]
rs73785706	1.00[AMR][1000 genomes]
rs73786952	1.00[AMR][1000 genomes]
rs73786955	1.00[AMR][1000 genomes]
rs73786956	1.00[AMR][1000 genomes]
rs73786958	1.00[AMR][1000 genomes]
rs73786963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786964	0.96[AFR][1000 genomes]
rs73786965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786985	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163520200-163534800	Weak transcription	Left Ventricle	heart
2	chr6:163531600-163532000	Genic enhancers	Fetal Heart	heart
3	chr6:163531800-163533200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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