Variant report

Variant	rs73784506
Chromosome Location	chr6:163570774-163570775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163567508..163570798-chr6:163571018..163574333,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11962673	1.00[AMR][1000 genomes]
rs1323637	1.00[AMR][1000 genomes]
rs16894487	1.00[AMR][1000 genomes]
rs2057502	1.00[AMR][1000 genomes]
rs2057503	1.00[AMR][1000 genomes]
rs34348407	1.00[AMR][1000 genomes]
rs55824084	1.00[AMR][1000 genomes]
rs57016827	1.00[AMR][1000 genomes]
rs58822295	1.00[AMR][1000 genomes]
rs73785706	1.00[AMR][1000 genomes]
rs73786952	1.00[AMR][1000 genomes]
rs73786955	1.00[AMR][1000 genomes]
rs73786956	1.00[AMR][1000 genomes]
rs73786958	1.00[AMR][1000 genomes]
rs73786963	1.00[AMR][1000 genomes]
rs73786965	1.00[AMR][1000 genomes]
rs73786967	1.00[AMR][1000 genomes]
rs73786969	1.00[AMR][1000 genomes]
rs73786971	1.00[AMR][1000 genomes]
rs73786972	1.00[AMR][1000 genomes]
rs73786973	1.00[AMR][1000 genomes]
rs73786974	1.00[AMR][1000 genomes]
rs73786975	1.00[AMR][1000 genomes]
rs73786976	1.00[AMR][1000 genomes]
rs73786977	1.00[AMR][1000 genomes]
rs73786978	1.00[AMR][1000 genomes]
rs73786979	1.00[AMR][1000 genomes]
rs73786980	1.00[AMR][1000 genomes]
rs73786983	1.00[AMR][1000 genomes]
rs73786985	1.00[AMR][1000 genomes]
rs73786997	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv886917	chr6:163507051-163573962	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163568600-163574000	Enhancers	Fetal Brain Male	brain
2	chr6:163568800-163572200	Enhancers	Brain Germinal Matrix	brain
3	chr6:163569400-163571800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:163570000-163571800	Enhancers	Brain Substantia Nigra	brain
5	chr6:163570000-163572200	Enhancers	Brain Anterior Caudate	brain
6	chr6:163570200-163570800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
7	chr6:163570200-163571000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:163570400-163571000	Weak transcription	Fetal Brain Female	brain
9	chr6:163570400-163571800	Enhancers	Brain Angular Gyrus	brain
10	chr6:163570400-163590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:163570600-163570800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:163570600-163570800	Enhancers	Brain Hippocampus Middle	brain
13	chr6:163570600-163572200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:163570600-163574000	Enhancers	Brain Cingulate Gyrus	brain

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