Variant report

Variant	rs58841129
Chromosome Location	chr11:16935691-16935692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16931317..16933544-chr11:16934483..16936096,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11820544	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs177545	0.81[ASN][1000 genomes]
rs177553	0.86[ASN][1000 genomes]
rs177556	0.86[ASN][1000 genomes]
rs177557	0.86[ASN][1000 genomes]
rs2108930	0.87[ASN][1000 genomes]
rs4757444	0.80[AFR][1000 genomes]
rs6486320	0.86[ASN][1000 genomes]
rs6486321	0.86[ASN][1000 genomes]
rs7117737	0.80[AFR][1000 genomes]
rs7117745	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:16927800-16944400	Weak transcription	A549	lung
6	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
7	chr11:16933000-16939200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:16933200-16939000	Weak transcription	HMEC	breast
9	chr11:16933400-16936800	Enhancers	Fetal Heart	heart
10	chr11:16934000-16936200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:16934200-16936800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:16934400-16939400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:16934600-16936200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:16934600-16939400	Weak transcription	Fetal Intestine Large	intestine
15	chr11:16934600-16939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:16934600-16939800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:16934600-16941400	Weak transcription	Liver	Liver
18	chr11:16934600-16942200	Weak transcription	Ovary	ovary
19	chr11:16934800-16936800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:16935000-16936400	Weak transcription	Right Ventricle	heart
21	chr11:16935000-16939200	Weak transcription	Gastric	stomach
22	chr11:16935200-16936200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:16935200-16936600	Weak transcription	Right Atrium	heart
24	chr11:16935200-16939000	Weak transcription	Pancreas	Pancrea
25	chr11:16935200-16939200	Weak transcription	Stomach Mucosa	stomach
26	chr11:16935200-16942200	Weak transcription	Left Ventricle	heart
27	chr11:16935400-16936400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:16935400-16936600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:16935600-16936000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:16935600-16936200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:16935600-16939200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links