Variant report

Variant	rs7117737
Chromosome Location	chr11:16938763-16938764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16938600..16942869-chr11:16945668..16948073,6	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10741716	0.91[ASN][1000 genomes]
rs10766359	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11829035	0.92[ASN][1000 genomes]
rs12221693	0.92[ASN][1000 genomes]
rs2215085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365215	0.81[ASN][1000 genomes]
rs4756878	0.92[ASN][1000 genomes]
rs4757444	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4757446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757453	0.87[ASN][1000 genomes]
rs55646909	0.90[ASN][1000 genomes]
rs58841129	0.80[AFR][1000 genomes]
rs7117745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121911	0.92[ASN][1000 genomes]
rs7481080	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7925386	0.92[ASN][1000 genomes]
rs7931794	0.91[ASN][1000 genomes]
rs982550	0.92[ASN][1000 genomes]
rs982551	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:16927800-16944400	Weak transcription	A549	lung
6	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
7	chr11:16933000-16939200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:16933200-16939000	Weak transcription	HMEC	breast
9	chr11:16934400-16939400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:16934600-16939400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:16934600-16939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:16934600-16939800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:16934600-16941400	Weak transcription	Liver	Liver
14	chr11:16934600-16942200	Weak transcription	Ovary	ovary
15	chr11:16935000-16939200	Weak transcription	Gastric	stomach
16	chr11:16935200-16939000	Weak transcription	Pancreas	Pancrea
17	chr11:16935200-16939200	Weak transcription	Stomach Mucosa	stomach
18	chr11:16935200-16942200	Weak transcription	Left Ventricle	heart
19	chr11:16935600-16939200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:16936800-16939000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:16936800-16939000	Weak transcription	Fetal Heart	heart
22	chr11:16936800-16944400	Weak transcription	Right Atrium	heart
23	chr11:16936800-16944400	Weak transcription	Right Ventricle	heart
24	chr11:16938400-16943400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:16938600-16939000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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