Variant report

Variant	rs7481080
Chromosome Location	chr11:16939531-16939532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16938600..16942869-chr11:16945668..16948073,6	MCF-7	breast:
2	chr11:16939336..16941584-chr11:16944195..16948360,3	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10741713	0.83[JPT][hapmap]
rs10741716	0.84[JPT][hapmap]
rs10766354	0.87[CEU][hapmap];0.80[AMR][1000 genomes]
rs10766356	0.87[CEU][hapmap]
rs10766359	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10766360	0.83[JPT][hapmap]
rs11024087	0.81[JPT][hapmap]
rs11829035	0.83[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs12221693	0.80[ASN][1000 genomes]
rs12418111	0.83[JPT][hapmap]
rs16933675	0.83[JPT][hapmap]
rs16933680	0.83[JPT][hapmap]
rs16933682	0.83[JPT][hapmap]
rs16933683	0.83[JPT][hapmap]
rs16933684	0.83[JPT][hapmap]
rs177561	0.83[JPT][hapmap]
rs177562	0.83[JPT][hapmap]
rs177563	0.83[JPT][hapmap]
rs2041236	0.87[CEU][hapmap]
rs2057788	0.83[JPT][hapmap]
rs2190752	0.82[JPT][hapmap]
rs2215085	0.84[CEU][hapmap];0.83[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2883150	0.83[JPT][hapmap]
rs369457	0.83[JPT][hapmap]
rs370161	0.87[CEU][hapmap];0.91[MEX][hapmap]
rs371905	0.83[JPT][hapmap]
rs378755	0.87[CEU][hapmap];0.91[MEX][hapmap]
rs381815	0.89[JPT][hapmap]
rs387849	0.83[JPT][hapmap]
rs388968	0.80[JPT][hapmap]
rs390974	0.83[JPT][hapmap]
rs393633	0.89[JPT][hapmap]
rs397343	0.83[JPT][hapmap]
rs397373	0.88[JPT][hapmap]
rs400085	0.83[JPT][hapmap]
rs400458	0.83[JPT][hapmap]
rs401820	0.83[JPT][hapmap]
rs402973	0.87[CEU][hapmap];0.91[MEX][hapmap]
rs406890	0.83[JPT][hapmap]
rs407354	0.88[JPT][hapmap]
rs414219	0.89[JPT][hapmap]
rs414992	0.89[JPT][hapmap]
rs420975	0.83[JPT][hapmap]
rs425325	0.89[JPT][hapmap]
rs428840	0.88[JPT][hapmap]
rs428933	0.83[JPT][hapmap]
rs430211	0.83[JPT][hapmap]
rs431208	0.83[JPT][hapmap]
rs432046	0.89[JPT][hapmap]
rs432373	0.87[CEU][hapmap]
rs433212	0.83[JPT][hapmap]
rs433225	0.83[JPT][hapmap]
rs434761	0.82[JPT][hapmap]
rs434899	0.81[JPT][hapmap]
rs435206	0.87[JPT][hapmap]
rs440212	0.83[JPT][hapmap]
rs442389	0.87[CEU][hapmap]
rs445146	0.81[JPT][hapmap]
rs445205	0.89[JPT][hapmap]
rs446518	0.88[JPT][hapmap]
rs448671	0.89[JPT][hapmap]
rs450828	0.83[JPT][hapmap]
rs452414	0.83[JPT][hapmap]
rs452745	0.82[JPT][hapmap]
rs454869	0.83[JPT][hapmap]
rs4756875	0.83[JPT][hapmap]
rs4756876	0.83[JPT][hapmap]
rs4756878	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs4757444	0.84[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4757446	0.84[CEU][hapmap];0.83[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757449	0.83[JPT][hapmap]
rs4757451	0.83[JPT][hapmap]
rs4757452	0.81[JPT][hapmap]
rs4757454	0.83[JPT][hapmap]
rs4757456	0.83[JPT][hapmap]
rs4757457	0.83[JPT][hapmap]
rs6486326	0.83[JPT][hapmap]
rs7111470	0.83[JPT][hapmap]
rs7117737	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7117745	0.84[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7121911	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs7924696	0.83[JPT][hapmap]
rs7925386	0.80[ASN][1000 genomes]
rs7926335	0.83[JPT][hapmap]
rs7931794	0.84[JPT][hapmap]
rs7939987	0.83[JPT][hapmap]
rs982550	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs982551	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927800-16944400	Weak transcription	A549	lung
4	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
5	chr11:16934600-16939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:16934600-16939800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:16934600-16941400	Weak transcription	Liver	Liver
8	chr11:16934600-16942200	Weak transcription	Ovary	ovary
9	chr11:16935200-16942200	Weak transcription	Left Ventricle	heart
10	chr11:16936800-16944400	Weak transcription	Right Atrium	heart
11	chr11:16936800-16944400	Weak transcription	Right Ventricle	heart
12	chr11:16938400-16943400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16939000-16940800	Enhancers	Pancreas	Pancrea
14	chr11:16939000-16941000	Enhancers	NHEK	skin
15	chr11:16939000-16941200	Enhancers	Placenta	Placenta
16	chr11:16939000-16941400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr11:16939000-16941600	Enhancers	Fetal Heart	heart
18	chr11:16939000-16941800	Enhancers	HMEC	breast
19	chr11:16939200-16940000	Enhancers	Gastric	stomach
20	chr11:16939200-16940400	Enhancers	Fetal Intestine Small	intestine
21	chr11:16939200-16941000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:16939200-16941600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:16939200-16945000	Enhancers	Stomach Mucosa	stomach
24	chr11:16939200-16945400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:16939400-16939600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:16939400-16940000	Enhancers	HUVEC	blood vessel
27	chr11:16939400-16940200	Enhancers	Fetal Intestine Large	intestine
28	chr11:16939400-16940800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:16939400-16941000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:16939400-16944800	Enhancers	Rectal Mucosa Donor 31	rectum

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