Variant report

Variant	rs58870233
Chromosome Location	chr7:41150050-41150051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59876177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73687906	1.00[EUR][1000 genomes]
rs73690456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73690465	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7786200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41146200-41151000	Enhancers	HMEC	breast
3	chr7:41147800-41151000	Enhancers	NHEK	skin
4	chr7:41147800-41151200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:41148000-41150800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41148000-41153400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:41148200-41150200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:41148400-41152800	Weak transcription	NHDF-Ad	bronchial
9	chr7:41148400-41153400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:41149600-41153400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:41149600-41153400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:41150000-41150200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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