Variant report

Variant	rs73690456
Chromosome Location	chr7:41147680-41147681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:41146681..41148489-chr7:41163349..41165376,2	MCF-7	breast:
2	chr7:41146553..41148320-chr7:41712206..41714771,2	MCF-7	breast:
3	chr7:41098763..41101210-chr7:41146647..41148149,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf10-1	chr7:41147457-41148212	XLOC_006059

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58870233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73687906	1.00[EUR][1000 genomes]
rs73690465	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7786200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41145600-41149600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:41146200-41151000	Enhancers	HMEC	breast
4	chr7:41147000-41147800	Flanking Active TSS	Hela-S3	cervix
5	chr7:41147000-41147800	Flanking Active TSS	NHEK	skin
6	chr7:41147000-41148200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:41147000-41148200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:41147000-41148400	Enhancers	NHDF-Ad	bronchial
9	chr7:41147000-41148600	Enhancers	HSMM	muscle
10	chr7:41147200-41147800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:41147200-41147800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr7:41147200-41147800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:41147200-41147800	Enhancers	HUVEC	blood vessel
14	chr7:41147200-41148000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:41147200-41148000	Active TSS	A549	lung
16	chr7:41147200-41148000	Enhancers	NHLF	lung
17	chr7:41147200-41148400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:41147200-41148600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:41147400-41147800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:41147400-41147800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:41147400-41147800	Flanking Active TSS	NH-A	brain
22	chr7:41147400-41147800	Flanking Active TSS	Osteobl	bone
23	chr7:41147400-41148000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:41147400-41148200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:41147600-41148000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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