Variant report

Variant	rs73687906
Chromosome Location	chr7:41172300-41172301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58870233	1.00[EUR][1000 genomes]
rs59876177	1.00[EUR][1000 genomes]
rs73690456	1.00[EUR][1000 genomes]
rs73690465	1.00[EUR][1000 genomes]
rs7786200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034605	chr7:41096638-41222426	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887989	chr7:41125447-41337044	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1028983	chr7:41165668-41635954	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41129200-41175200	Weak transcription	Aorta	Aorta
2	chr7:41167600-41174400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:41168200-41175600	Enhancers	Fetal Brain Male	brain
4	chr7:41169000-41175400	Enhancers	Fetal Brain Female	brain
5	chr7:41169800-41175200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:41170000-41173400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:41170000-41174400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:41170400-41173400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:41170400-41173800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:41170400-41173800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:41170600-41173200	Weak transcription	Brain Germinal Matrix	brain
12	chr7:41170600-41173400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:41170600-41173600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:41170600-41175200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:41170800-41173400	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:41170800-41173800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:41171200-41172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:41171200-41173200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:41171400-41175400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr7:41171800-41173200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:41172000-41173800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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