Variant report

Variant	rs58887660
Chromosome Location	chr6:13535883-13535884
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13511916..13513600-chr6:13535489..13538424,2	K562	blood:
2	chr6:13531768..13533275-chr6:13533544..13536510,2	K562	blood:
3	chr6:13535769..13538764-chr6:13574933..13577249,3	MCF-7	breast:
4	chr6:13531775..13533316-chr6:13534987..13536510,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57461916	0.80[AFR][1000 genomes]
rs60607722	0.80[AFR][1000 genomes]
rs73356416	0.80[AFR][1000 genomes]
rs73356419	0.80[AFR][1000 genomes]
rs73356424	0.80[AFR][1000 genomes]
rs73356428	0.80[AFR][1000 genomes]
rs73356430	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13528200-13536000	Weak transcription	Right Ventricle	heart
2	chr6:13529600-13536600	Weak transcription	Spleen	Spleen
3	chr6:13529800-13536000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:13530000-13537200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:13532600-13536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:13532800-13536000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:13532800-13537200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:13533200-13536200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:13534800-13536800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:13534800-13537000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:13535000-13536600	Weak transcription	Lung	lung
12	chr6:13535000-13536800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:13535000-13537000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:13535200-13536000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:13535200-13536400	Weak transcription	Right Atrium	heart
16	chr6:13535200-13536600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:13535200-13536800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:13535400-13537200	Weak transcription	HUVEC	blood vessel
19	chr6:13535600-13536400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:13535800-13536800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:13535800-13536800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:13535800-13537000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:13535800-13537400	Enhancers	Left Ventricle	heart

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